AutoSolvate
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Contents:
Installation
Tutorial
GUI Tutorial
Advanced Tutorial
API Documentation
AutoSolvateWeb Job Parameters
Citation
AutoSolvate
Index
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Index
_
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B
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C
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G
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P
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R
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S
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W
_
__init__() (autosolvate.solventBoxBuilder method)
B
build() (autosolvate.solventBoxBuilder method)
C
clustergen() (in module autosolvate.clustergen)
createAmberParm() (autosolvate.solventBoxBuilder method)
createLib() (autosolvate.solventBoxBuilder method)
G
getFrcmod() (autosolvate.solventBoxBuilder method)
getHeadTail() (autosolvate.solventBoxBuilder method)
getSolutePDB() (autosolvate.solventBoxBuilder method)
P
packSLUSLV() (autosolvate.solventBoxBuilder method)
processPackmolPDB() (autosolvate.solventBoxBuilder method)
R
runMM() (in module autosolvate.generatetrajs)
runQMMM() (in module autosolvate.generatetrajs)
S
solventBoxBuilder (class in autosolvate)
startboxgen() (in module autosolvate)
startclustergen() (in module autosolvate.clustergen)
startmd() (in module autosolvate.generatetrajs)
W
writeMMheatInput() (in module autosolvate.generatetrajs)
writeMMminInput() (in module autosolvate.generatetrajs)
writeMMNPTInput() (in module autosolvate.generatetrajs)
writeMMNVEInput() (in module autosolvate.generatetrajs)
writeQMMMInput() (in module autosolvate.generatetrajs)
writeQMMMMinInput() (in module autosolvate.generatetrajs)
writeQMMMTemplate() (in module autosolvate.generatetrajs)
writeTleapcmd1() (autosolvate.solventBoxBuilder method)
writeTleapcmd_add_solvent() (autosolvate.solventBoxBuilder method)
writeTleapcmd_custom_solvated() (autosolvate.solventBoxBuilder method)
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