Index

_

__init__() (autosolvate.autosolvate.AmberParamsBuilder method) (autosolvate.autosolvate.solventBoxBuilder method) (autosolvate.multicomponent.MixtureBuilder method) (autosolvate.multicomponent.MulticomponentParamsBuilder method) (autosolvate.multicomponent.MulticomponentSolventBoxBuilder method)

A

add_solute() (autosolvate.multicomponent.MixtureBuilder method)

add_solvent() (autosolvate.multicomponent.MixtureBuilder method) AmberParamsBuilder (class in autosolvate.autosolvate)

B

build() (autosolvate.autosolvate.solventBoxBuilder method) (autosolvate.multicomponent.MixtureBuilder method)

C

clustergen() (in module autosolvate.clustergen)

M

MixtureBuilder (class in autosolvate.multicomponent)

MulticomponentParamsBuilder (class in autosolvate.multicomponent) MulticomponentSolventBoxBuilder (class in autosolvate.multicomponent)

R

runMM() (in module autosolvate.generatetrajs)

runQMMM() (in module autosolvate.generatetrajs)

S

solventBoxBuilder (class in autosolvate.autosolvate) startboxgen() (in module autosolvate) (in module autosolvate.autosolvate)

startclustergen() (in module autosolvate.clustergen) startmd() (in module autosolvate.generatetrajs) startmulticomponent() (in module autosolvate.multicomponent) startmulticomponent_fromfile() (in module autosolvate.multicomponent)

W

writeMMheatInput() (in module autosolvate.generatetrajs) writeMMminInput() (in module autosolvate.generatetrajs) writeMMNPTInput() (in module autosolvate.generatetrajs)

writeMMNVEInput() (in module autosolvate.generatetrajs) writeQMMMInput() (in module autosolvate.generatetrajs) writeQMMMMinInput() (in module autosolvate.generatetrajs) writeQMMMTemplate() (in module autosolvate.generatetrajs)